Proposed Calendar for the first 5 weeks
Alignment Matrices: Explanation and Questions
GUI Design for Matrix Alignment
iTunes Alignment Project pt I and II
Alignment Test Cases (pdf) and .txt
Improved Global Alignment
Readings for Discussion (7/25)
Bio Model Sharing (pdf)
Things to Come (pdf)
Biology by the Numbers (pdf)

Links to External Sites

Multiple Alignment
Alignment Methods
Click on 'JavaShade'
Phred, Phrap and Consed
Basics of Phrap
Basics of Shotgun Sequencing
Celera Homepage
More alignment links...
::Salmon FASTA::